miRBase entry: eca-mir-8908b-4

Stem-loop eca-mir-8908b-4


Accession
MI0028349
Description
Equus caballus eca-mir-8908b-4 precursor miRNA
Gene family
MIPF0001890; mir-8908


Sequence

16201 reads, 2452 reads per million, 1 experiments
gacugggcagauccuccaccuugagccaugcugugugcagugcccuacccggaagguacugaucacuuagccuacaugUAAUUAGUACCUGUCUGGGUAGAguaaugcucaacaagaacaacauuuguggaggccuucaga
..((((..((..(((((((............((((.(((.(((.(((((((((((((((((((.((...........)).)))))))))).))))))))).))).))).).)))............))))))).)))))).

Structure
ga    gc  au       cuugagccaugc   - u   g   c         -          c  uuag 
  cugg  ag  ccuccac            ugu g gca ugc cuacccgga agguacugau ac    c
  ||||  ||  |||||||            ||| | ||| ||| ||||||||| |||||||||| ||    c
  gacu  uc  ggaggug            aca c cgu aug GAUGGGUCU UCCAUGAUUA Ug    u
-a    --  -c       uuuacaacaaga   a u   a   A         G          A  uaca 


Annotation confidence High
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Genome context
chrX: 115870758-115870898 [-]
Clustered miRNAs
18 other miRNAs are < 10 kb from eca-mir-8908b-4
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-8908b

Accession MIMAT0034697
Description Equus caballus eca-miR-8908b mature miRNA
Sequence 79 - UAAUUAGUACCUGUCUGGGUAGA - 101
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545