Stem-loop eca-mir-2114

Accession

MI0028354

Description

Equus caballus eca-mir-2114 precursor miRNA

Gene family

MIPF0001464; mir-2114

Literature search

1 open access papers mention eca-mir-2114
(1 sentences)

Sequence

9 reads, 1 reads per million, 1 experiments

ugggcucagggacaggccauggccuccaugcuccuagucccuuccuugaagggucggauaagucacaugacgAGCCUCAAGCAAGGGACUUUGAgcugguggcucccagcagccuccuguuccugaacc
..((.(((((((((((....((((.(((.((((..((((((((.(((((.((.(((..............))).))))))).))))))))..))))))).))))...........))))))))))).))

Structure

ug  c           -------ccau    u   u    cu        c     a  g   gauaag 
  gg ucagggacagg           ggcc cca gcuc  agucccuu cuuga gg ucg      u
  || |||||||||||           |||| ||| ||||  |||||||| ||||| || |||       
  cc aguccuugucc           ucgg ggu cgAG  UCAGGGAA GAACU CC Agc      c
--  a           uccgacgaccc    u   -    UU        C     -  G   aguaca 

Annotation confidence Not enough data

Genome context

chrX: 119236745-119236873 [+]

Mature eca-miR-2114

• Accession: MIMAT0034714
• Description: Equus caballus eca-miR-2114 mature miRNA
• Sequence: 73 - AGCCUCAAGCAAGGGACUUUGA - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545