miRBase entry: eca-mir-8908f-1

Stem-loop eca-mir-8908f-1


Accession
MI0028356
Description
Equus caballus eca-mir-8908f-1 precursor miRNA
Gene family
MIPF0001890; mir-8908


Sequence

35 reads, 5 reads per million, 1 experiments
gcaggaucuaccacuuuagccaugcuguggugcaguguccUACUCAGAAAGGUACUGAUCACUuagaggacauguagucacugccuuucuggguagaaugaugcccaacaagaacaacauugcugguggccgguagcagug
(((((..(((......))))).)))(((((.(((..((.(((((((((((((((.((((.((...........)).)))).))))))))))))))).))..))))).))).......((((((((........))))))))

Structure
------gcaggaucuaccacuuuagccaugc   -  u   gu  c               C    C  Uuag 
                               ugu gg gca  gu cUACUCAGAAAGGUA UGAU AC    a
                               ||| || |||  || ||||||||||||||| |||| ||    g
                               aca cc cgu  ua gaugggucuuuccgu acug ug    g
gugacgauggccgguggucguuacaacaaga   a  -   ag  a               c    a  uaca 


Annotation confidence Not enough data
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Genome context
chrX: 115854781-115854921 [-]
Clustered miRNAs
11 other miRNAs are < 10 kb from eca-mir-8908f-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-8908f

Accession MIMAT0034701
Description Equus caballus eca-miR-8908f mature miRNA
Sequence 41 - UACUCAGAAAGGUACUGAUCACU - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545