miRBase entry: eca-mir-8908a-2

Stem-loop eca-mir-8908a-2


Accession
MI0028361
Description
Equus caballus eca-mir-8908a-2 precursor miRNA
Gene family
MIPF0001890; mir-8908


Sequence

2904 reads, 440 reads per million, 1 experiments
ggcagauacuccacuuugauccauucugugugcagugcccuacccagcaagguacugaucgcuuagacgagguaugAUCAGUGCCUGUCUAGGUGGAguaaugcucaacaagaacaacguuuggaagcgucaucaga
((((..(((((((((..((.....)).(((..(((((((...........)))))))..))).(((((.((((((.....)))))))))))))))))))).))))...........(((((....))))).......

Structure
--------------------------------    ga         uugauccauucugugugcagugcccuacccagcaagguacugaucgcu     g      g 
                                ggca  uacuccacu                                                uagac agguau A
                                ||||  |||||||||                                                ||||| |||||| U
                                ucgu  augAGGUGG                                                AUCUG UCCGUG C
agacuacugcgaagguuugcaacaagaacaac    -a         ------------------------------------------------     -      A 


Annotation confidence Not enough data
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Genome context
chrX: 115865962-115866098 [-]
Clustered miRNAs
19 other miRNAs are < 10 kb from eca-mir-8908a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-8908a

Accession MIMAT0034713
Description Equus caballus eca-miR-8908a mature miRNA
Sequence 77 - AUCAGUGCCUGUCUAGGUGGA - 97
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545