miRBase entry: eca-mir-9058b

Stem-loop eca-mir-9058b


Accession
MI0028364
Description
Equus caballus eca-mir-9058b precursor miRNA
Gene family
MIPF0002028; mir-9058


Sequence

95 reads, 3 reads per million, 1 experiments
ggggucuuccagccuuguggcugcuggaugggugcucucuacuagugcugugcagaggcuuucacugaggcugcUGUGAGCCUGUAGGGUUUCCCCCAggcuacggagccaggucgcuggaacgccacccagc
(((((.(((((((..(.(((((.((((.((((....((((((.((.(((..((((.((((((....)))))).)))).))))))))))).....))))..))).).))))).)..))))))).))).))....

Structure
----  -   c       cu g     g -   -a    -ugcu      u  u   gu    a      c 
    gg ggu uuccagc  u uggcu c ugg  uggg     cucuac ag gcu  gcag ggcuuu a
    || ||| |||||||  | ||||| | |||  ||||     |||||| || |||  |||| ||||||  
    cc ccg aaggucg  g accga g auc  ACCC     GGGAUG UC CGA  UGUc ucggag c
cgac  a   c       cu g     g c   gg    CCUUU      -  -   -G    g      u 


Annotation confidence Not enough data
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Genome context
chrX: 42363578-42363710 [-]

Database links

Mature eca-miR-9058b

Accession MIMAT0034718
Description Equus caballus eca-miR-9058b mature miRNA
Sequence 75 - UGUGAGCCUGUAGGGUUUCCCCCA - 98
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545