Stem-loop eca-mir-9153

Accession

MI0028376

Description

Equus caballus eca-mir-9153 precursor miRNA

Sequence

1 reads, 0 reads per million, 1 experiments

cgugucggccagcagcguggcgggcucggcgcagaagauggagaagcugagcugcaggcggccgccgcgcgucaggaugaGCUCCAGGAAGUCGCAGAAGCCCUCgucgucgaaguagagcacuaggccgcgcgcgcugcgcguc
((((.((((..((.(((((((((((((.(((.......(((((...((((((.((.(((....))))))).))))......)))))......))).).)))))..((..((......))..))...)))))))))))))))))..

Structure

--    u    ca  a       -----------------------     - g   cagaaga     ---aag    -  u  a   g 
  cgug cggc  gc gcguggc                       gggcu c gcg       uggag      cuga gc gc ggc g
  |||| ||||  || |||||||                       ||||| | |||       |||||      |||| || || |||  
  gcgc gucg  cg cgcgccg                       CCCGA G CGC       ACCUC      gacu cg cg ccg c
cu    -    --  -       gaucacgagaugaagcugcugCU     A A   -UGAAGG     Gaguag    g  -  -   c 

Annotation confidence Not enough data

Genome context

chr15: 48572078-48572222 [-]

Mature eca-miR-9153

• Accession: MIMAT0034729
• Description: Equus caballus eca-miR-9153 mature miRNA
• Sequence: 81 - GCUCCAGGAAGUCGCAGAAGCCCUC - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545