miRBase entry: eca-mir-9164

Stem-loop eca-mir-9164


Accession
MI0028388
Description
Equus caballus eca-mir-9164 precursor miRNA


Sequence

1 reads, 0 reads per million, 1 experiments
guuuggugaggcaaggccaugucugguuucugagaacugcaagagcgcagagcggcgucaccgucguuaguggggACUGGCUCUGCUCUGUGGCUgcagaugguagacagcaaagaggcuccguuucugcuccug
....((((((((..((((...(((.(((((((....(((((.(..((((((((((.((((..(((.........))))))).)))))))))).))))))....)))).)))..)))))))..))))).)))....

Structure
guuu   -     aa    aug   -g   -    agaa     a ag          c    cc   guu 
    ggu gaggc  ggcc   ucu  guu ucug    cugca g  cgcagagcgg guca  guc   a
    ||| |||||  ||||   |||  ||| ||||    ||||| |  |||||||||| ||||  |||   g
    ucg cuuug  ucgg   aga  cga agau    gacgU C  GUGUCUCGUC CGGU  CAg   u
gucc   u     cc    ---   aa   c    ggua     - -G          U    --   ggg 


Annotation confidence Not enough data
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Genome context
chr17: 78382172-78382306 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-9164
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-9164

Accession MIMAT0034741
Description Equus caballus eca-miR-9164 mature miRNA
Sequence 76 - ACUGGCUCUGCUCUGUGGCU - 95
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545