miRBase entry: eca-mir-9175

Stem-loop eca-mir-9175


Accession
MI0028403
Description
Equus caballus eca-mir-9175 precursor miRNA


Sequence

1 reads, 0 reads per million, 1 experiments
ccuuugugccaccaccacuccccauccccuaacccugcucugagggguuuuuaaugaaguggcaucugaaguaugcgcucUAGACAUUGGCCCUGGAUCCUUGGGggcagggggcggggaggagagaaaggggagaggcacgcca
....((((((.((.((.(((.((.(((((...(((((((((.((((((((.......((.(((.((((.(((....))).)))).....))))))))))))).)))))))))...))))))).)))...))))...))))))...

Structure
ccuu      --a  a  --a   c  a     uaa         g        uuaauga  u   ----a    a   a 
    ugugcc   cc cc   cuc cc ucccc   cccugcucu agggguuu       ag ggc     ucug agu u
    ||||||   || ||   ||| || |||||   ||||||||| ||||||||       || |||     |||| |||  
    gcacgg   gg gg   gag gg agggg   gggacggGG UUCCUAGG       UC CCG     AGAU ucg g
-acc      aga  -  aaa   a  -     cgg         G        -------  -   GUUAC    c   c 


Annotation confidence Not enough data
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Genome context
chr16: 4539682-4539826 [-]

Database links

Mature eca-miR-9175

Accession MIMAT0034755
Description Equus caballus eca-miR-9175 mature miRNA
Sequence 81 - UAGACAUUGGCCCUGGAUCCUUGGG - 105
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545