miRBase entry: efu-mir-9246a

Stem-loop efu-mir-9246a


Accession
MI0028535
Description
Eptesicus fuscus efu-mir-9246a precursor miRNA
Gene family
MIPF0001940; mir-9246


Sequence

gccucggggccagggccgggggugagcccggggugagcugcugcUGCCCACGGCUCCCCUGGUUGCAAGccucgugggg
.((.((((((...(((((((((..((((..((((.(((....)))))))..)))))))))))))....)))))).))..

Structure
-g  u      -cag         ug    cg    g   u 
  cc cggggc    ggccggggg  agcc  gggu agc g
  || ||||||    |||||||||  ||||  |||| |||  
  gg gcuccG    UUGGUCCCC  UCGG  CCCG Ucg c
gg  u      AACG         --    CA    -   u 


Annotation confidence Not enough data
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Genome context
JH977771.1: 803559-803637 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from efu-mir-9246a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature efu-miR-9246a

Accession MIMAT0034860
Description Eptesicus fuscus efu-miR-9246a mature miRNA
Sequence 45 - UGCCCACGGCUCCCCUGGUUGCAAG - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545