miRBase entry: efu-mir-9246c

Stem-loop efu-mir-9246c


Accession
MI0028538
Description
Eptesicus fuscus efu-mir-9246c precursor miRNA
Gene family
MIPF0001940; mir-9246


Sequence

agcccauggcUCCCCUGGUUGCAAGCCUCGUggguuuuaggguuuaggagauguacgccuuugggggaaauaggggaaug
..(((.((..(((((((((((((...(((.((((........)))).))).)))).)))...))))))..)).)))....

Structure
--ag   a  gc      ---   -    AGC   G    uuu 
    ccc ug  UCCCCU   GGU UGCA   CUC Uggg   u
    ||| ||  ||||||   ||| ||||   ||| ||||    
    ggg au  aggggg   ccg augu   gag auuu   a
guaa   g  aa      uuu   c    --a   g    ggg 


Annotation confidence Not enough data
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Genome context
JH977672.1: 1449272-1449351 [+]

Database links

Mature efu-miR-9246c

Accession MIMAT0034863
Description Eptesicus fuscus efu-miR-9246c mature miRNA
Sequence 11 - UCCCCUGGUUGCAAGCCUCGU - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545