miRBase entry: efu-mir-194-1

Stem-loop efu-mir-194-1


Accession
MI0028609
Description
Eptesicus fuscus efu-mir-194-1 precursor miRNA
Gene family
MIPF0000055; mir-194


Sequence

aguuaucaagUGUAACAGCAACUCCAUGUGGAcugaguaccaauuuccaguggagaugcuguuacuuuugaugguuac
..((((((((.(((((((((.((((((.((((.((.....))...)))))))))).))))))))).))))))))....

Structure
--ag        U         A      G    --c  a 
    uuaucaag GUAACAGCA CUCCAU UGGA   ug g
    |||||||| ||||||||| |||||| ||||   || u
    gguaguuu cauugucgu gaggug accu   ac a
cauu        u         a      -    uua  c 


Annotation confidence Not enough data
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Genome context
JH977666.1: 4370823-4370900 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from efu-mir-194-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature efu-miR-194

Accession MIMAT0034924
Description Eptesicus fuscus efu-miR-194 mature miRNA
Sequence 11 - UGUAACAGCAACUCCAUGUGGA - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545