miRBase entry: efu-mir-18

Stem-loop efu-mir-18


Accession
MI0028682
Description
Eptesicus fuscus efu-mir-18 precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

cuuuuuguucUAAGGUGCAUCUAGUGCAGAUAGUGaaguagauuagcaucuacugcccuaagugcuccuucuggcauaagaaguu
((((((((.((((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).)))..))).))))))))..

Structure
--        u   --   U    C   U    A   -  aa u 
  cuuuuugu cUA  AGG GCAU UAG GCAG UAG UG  g a
  |||||||| |||  ||| |||| ||| |||| ||| ||  | g
  gaagaaua ggu  ucc cgug auc cguc auc ac  u a
uu        c   cu   u    a   c    -   u  ga u 


Annotation confidence Not enough data
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Genome context
JH977750.1: 95596-95680 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from efu-mir-18
Name Accession Chromosome Start End Strand Confidence




Database links

Mature efu-miR-18

Accession MIMAT0034997
Description Eptesicus fuscus efu-miR-18 mature miRNA
Sequence 11 - UAAGGUGCAUCUAGUGCAGAUAGUG - 35
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545