miRBase entry: efu-mir-409

Stem-loop efu-mir-409

Accession

MI0028726

Description

Eptesicus fuscus efu-mir-409 precursor miRNA

Gene family

MIPF0000018; mir-154

Sequence

uacucggggagagguuacccgagcaacuuugcauccagacgaCGAAUGUUGCUCGGUGAACCCCUUuucgguauca
(((.(((((((.((((..((((((((((((((........).)))).)))))))))..)))).))))))))))...

Structure

---   u       a    ac         -    - auc 
   uac cggggag gguu  ccgagcaac uuug c   c
   ||| ||||||| ||||  ||||||||| |||| |    
   aug gcuuUUC CCAA  GGCUCGUUG AAGC g   a
acu   -       C    GU         U    a cag

Annotation confidence Not enough data

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Genome context

JH977717.1: 833062-833137 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from efu-mir-409

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature efu-miR-409

Accession	MIMAT0035041
Description	Eptesicus fuscus efu-miR-409 mature miRNA
Sequence	43 - CGAAUGUUGCUCGGUGAACCCCUU - 66
Evidence	experimental Illumina [1]

References

PubMed ID: 24692655
Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
"Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
"Mol Biol Evol (2014) 31:1536-1545