miRBase entry: efu-mir-30d

Stem-loop efu-mir-30d


Accession
MI0028759
Description
Eptesicus fuscus efu-mir-30d precursor miRNA
Gene family
MIPF0000005; mir-30


Sequence

5 reads, 6460 reads per million, 1 experiments
aagucugugguuguaaacauccccgacuggaagcuguaagacagaacuaagCUUUCAGUCAGAUGUUUGCUGCUaccagcuuuu
((((..(((((.(((((((((...(((((((((((..............))))))))))).))))))))).)))))..))))..

Structure
--    cu     u         ccc           guaaga 
  aagu  guggu guaaacauc   gacuggaagcu      c
  ||||  ||||| |||||||||   |||||||||||       
  uucg  caUCG CGUUUGUAG   CUGACUUUCga      a
uu    ac     U         --A           aucaag 


Annotation confidence Not enough data
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Genome context
JH977754.1: 848852-848935 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from efu-mir-30d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature efu-miR-30d

Accession MIMAT0035071
Description Eptesicus fuscus efu-miR-30d mature miRNA
Sequence 52 - CUUUCAGUCAGAUGUUUGCUGCU - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545