miRBase entry: efu-mir-188

Stem-loop efu-mir-188


Accession
MI0028856
Description
Eptesicus fuscus efu-mir-188 precursor miRNA
Gene family
MIPF0000113; mir-188


Sequence

cccucucucaCAUCCCUUGCAUGGUGGAGGGUgcgcuugcugaaaaccccucccacaugcaggguuugcaggauggugag
......(((((((((((((((((..((((((....(.....).....))))))..)))))))).......)))).)))))

Structure
cccucu     -    -------        GU      -Ugcg u 
      cucaC AUCC       CUUGCAUG  GGAGGG     c u
      ||||| ||||       ||||||||  ||||||     | g
      gagug uagg       ggacguac  ccuccc     g c
------     g    acguuug        ac      caaaa u 


Annotation confidence Not enough data
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Genome context
JH977797.1: 837233-837312 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from efu-mir-188
Name Accession Chromosome Start End Strand Confidence




Database links

Mature efu-miR-188

Accession MIMAT0035151
Description Eptesicus fuscus efu-miR-188 mature miRNA
Sequence 11 - CAUCCCUUGCAUGGUGGAGGGU - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545