miRBase entry: efu-mir-500

Stem-loop efu-mir-500


Accession
MI0028857
Description
Eptesicus fuscus efu-mir-500 precursor miRNA
Gene family
MIPF0000139; mir-500


Sequence

uggcucccucacucuaauccuugcuaccugggugagagugcuuucugaaugcAAUGCACCUGGGCAAGGAUUCUGAgaggggcagc
..(((((((((....(((((((((...(((((((....(((.........)))...)))))))))))))))).)))).)))))...

Structure
-ug     -    cucu         uac       agag   uuu 
   gcucc cuca    aauccuugc   cugggug    ugc   c
   ||||| ||||    |||||||||   |||||||    |||   u
   cgggg gAGU    UUAGGAACG   GGUCCAC    Acg   g
cga     a    ---C         ---       -GUA   uaa 


Annotation confidence Not enough data
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Genome context
JH977797.1: 842978-843063 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from efu-mir-500
Name Accession Chromosome Start End Strand Confidence




Database links

Mature efu-miR-500

Accession MIMAT0035152
Description Eptesicus fuscus efu-miR-500 mature miRNA
Sequence 53 - AAUGCACCUGGGCAAGGAUUCUGA - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545