miRBase entry: efu-mir-194-2

Stem-loop efu-mir-194-2


Accession
MI0028864
Description
Eptesicus fuscus efu-mir-194-2 precursor miRNA
Gene family
MIPF0000055; mir-194


Sequence

ugccacccccUGUAACAGCAACUCCAUGUGGAagugcccgcucguuccaguggggcugcuguuaucuggggugggggc
(.(((((((..(((((((((.((((((.(((((...........))))))))))).)))))))))..))))))).)..

Structure
-- g       cU         A      G     gugc 
  u ccacccc  GUAACAGCA CUCCAU UGGAa    c
  | |||||||  ||||||||| |||||| |||||    c
  g ggugggg  uauugucgu ggggug accuu    g
cg g       uc         c      -     gcuc 


Annotation confidence Not enough data
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Genome context
JH977826.1: 1052832-1052909 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from efu-mir-194-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature efu-miR-194

Accession MIMAT0034924
Description Eptesicus fuscus efu-miR-194 mature miRNA
Sequence 11 - UGUAACAGCAACUCCAUGUGGA - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545