miRBase entry: efu-mir-16-2

Stem-loop efu-mir-16-2


Accession
MI0028901
Description
Eptesicus fuscus efu-mir-16-2 precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
1 open access papers mention efu-mir-16-2
(1 sentences)

Sequence

uguuccgcucUAGCAGCACGUAAAUAUUGGCGUagugaaauaaacauuaaacaccaauauuauugugcugcuuuagcgugacagg
((((.((((..(((((((((..((((((((.((((((.......))))..)).))))))))..)))))))))..)))).))))..

Structure
--    c    cU         UA        C  --    aa 
  uguu cgcu  AGCAGCACG  AAUAUUGG GU  agug  a
  |||| ||||  |||||||||  |||||||| ||  ||||  u
  acag gcga  ucgucgugu  uuauaacc ca  uuac  a
gg    u    uu         ua        a  aa    aa 


Annotation confidence Not enough data
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Genome context
JH977627.1: 6223011-6223095 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from efu-mir-16-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature efu-miR-16

Accession MIMAT0035087
Description Eptesicus fuscus efu-miR-16 mature miRNA
Sequence 11 - UAGCAGCACGUAAAUAUUGGCGU - 33
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545