Stem-loop gsa-mir-87

Accession

MI0028940

Description

Gyrodactylus salaris gsa-mir-87 precursor miRNA

Gene family

MIPF0000152; mir-87

Sequence

ACGCCUGAUACUAGGCUCUUACCAucagaguugauagaaagaauauuucuguaucgaaggaauugauuuucccgcaauacuaaaaucuuuuuacuuuugGUGAGCAAAGUUUCAGGUGUGC
((((((((.(((..((((..((((..(((((....(((((((...(((..((((.(..((((......))))..).))))..)))))))))))))))))))))))..))).))))))))..

Structure

--        U   AG    UU    uc     ugau       aua   cu    c aa    uu 
  ACGCCUGA ACU  GCUC  ACCA  agagu    agaaaga   uuu  guau g  ggaa  g
  |||||||| |||  ||||  ||||  |||||    |||||||   |||  |||| |  ||||   
  UGUGGACU UGA  CGAG  UGgu  uuuca    uuuuucu   aaa  caua c  ccuu  a
CG        U   AA    --    --     ----       ---   au    a gc    uu 

Annotation confidence Not enough data

Genome context

Unknown

Mature gsa-miR-87-5p

• Accession: MIMAT0035242
• Description: Gyrodactylus salaris gsa-miR-87-5p mature miRNA
• Sequence: 1 - ACGCCUGAUACUAGGCUCUUACCA - 24
• Evidence: experimental ; Illumina [1]

Mature gsa-miR-87-3p

• Accession: MIMAT0035243
• Description: Gyrodactylus salaris gsa-miR-87-3p mature miRNA
• Sequence: 100 - GUGAGCAAAGUUUCAGGUGUGC - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24025793
   Substantial loss of conserved and gain of novel MicroRNA families in flatworms
   "Fromm B, Worren MM, Hahn C, Hovig E, Bachmann L"
   "Mol Biol Evol (2013) 30:2619-2628