Stem-loop gsa-mir-9393

Accession

MI0028984

Description

Gyrodactylus salaris gsa-mir-9393 precursor miRNA

Sequence

GUGAGGGAAUGGUUUUUCGAUUgacauaauuucaguuuuauaauucuauaaaaagaaaagaaaaacgauaaaaaugcaagaacccuuaaUCUCUAAACUCUUCCUUCCAGU
(.(((((((.(((((...(((((((((.......(((((....((((......))))....))))).......))).........))))))...))))).))))))))...

Structure

--- U       U     UUC      ---------   aauuuca     auaa    au 
   G GAGGGAA GGUUU   GAUUga         cau       guuuu    uucu  a
   | ||||||| |||||   ||||||         |||       |||||    ||||   
   C CUUCCUU UCAAA   CUaauu         gua       caaaa    aaga  a
UGA -       C     UCU      cccaagaac   aaaauag     agaa    aa 

Annotation confidence Not enough data

Genome context

Unknown

Mature gsa-miR-9393-5p

• Accession: MIMAT0035330
• Description: Gyrodactylus salaris gsa-miR-9393-5p mature miRNA
• Sequence: 1 - GUGAGGGAAUGGUUUUUCGAUU - 22
• Evidence: experimental ; Illumina [1]

Mature gsa-miR-9393-3p

• Accession: MIMAT0035331
• Description: Gyrodactylus salaris gsa-miR-9393-3p mature miRNA
• Sequence: 90 - UCUCUAAACUCUUCCUUCCAGU - 111
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24025793
   Substantial loss of conserved and gain of novel MicroRNA families in flatworms
   "Fromm B, Worren MM, Hahn C, Hovig E, Bachmann L"
   "Mol Biol Evol (2013) 30:2619-2628