Stem-loop sequence xtr-mir-428b

AccessionMI0029001
DescriptionXenopus tropicalis miR-428b stem-loop
Stem-loop
   -----------    -     cag     a   -      u  g   ug  ac 
5'            cugg gcuca   cagcc aac agaagc cu ucu  ug  u
              |||| |||||   ||||| ||| |||||| || |||  ||   
3'            ggcc cgggu   gucgg uug ucuucg ga aga  au  c
   gacugcuaaag    a     uua     c   c      u  a   gu  cu 
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Confidence
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Genome context
Coordinates (JGI4.2) Overlapping transcripts
GL173945.1: 80715-80809 [-]
intergenic
Clustered miRNAs
< 10kb from xtr-mir-428b
xtr-mir-428aGL173945.1: 81115-81185 [-]
xtr-mir-428bGL173945.1: 80715-80809 [-]

Mature sequence xtr-miR-428b

Accession MIMAT0035362
Sequence

48 - 

gagaaagugcuucucguucggcuga

 - 72

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Evidence experimental; Illumina [1]

References

1
PMID:24065776 "Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements" Harding JL, Horswell S, Heliot C, Armisen J, Zimmerman LB, Luscombe NM, Miska EA, Hill CS Genome Res. 24:96-106(2014).