miRBase entry: nve-mir-9460-4

Stem-loop nve-mir-9460-4


Accession
MI0029086
Description
Nematostella vectensis nve-mir-9460-4 precursor miRNA
Gene family
MIPF0001910; mir-9460


Sequence

921 reads, 5485 reads per million, 18 experiments
ucuguuguuuaugccccacgauaacguaggcagaaaaaccuaucguUACGCGUUGGUCGUGAUUGAua
..(((((.(((((.((.(((.(((((((((........)))).)))))..))).)).))))).)))))

Structure
uc     u     c  c   -a     -    cag 
  uguug uuaug cc acg  uaacg uagg   a
  ||||| ||||| || |||  ||||| ||||    
  auAGU AGUGC GG UGC  AUugc aucc   a
--     U     U  U   GC     u    aaa 


Annotation confidence Not enough data
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Genome context
scaffold_137: 33984-34051 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from nve-mir-9460-4
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nve-miR-9460

Accession MIMAT0035421
Description Nematostella vectensis nve-miR-9460 mature miRNA
Sequence 47 - UACGCGUUGGUCGUGAUUGA - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24642861
    Cnidarian microRNAs frequently regulate targets by cleavage
    "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
    "Genome Res (2014) 24:651-663