miRBase entry: sly-MIR9472

Stem-loop sly-MIR9472


Accession
MI0029108
Description
Solanum lycopersicum sly-MIR9472 precursor miRNA

Literature search
2 open access papers mention sly-MIR9472
(6 sentences)

Sequence

auggguuucaauuauagcuacagaucuucccauagaucuacucgauuuauuUUUCAGUAGACGUUGUGAAUAauugauaaauacagguauacagaggucuuaauauagucagaaccuagaaauauguguaacuagauucagaccuuuguacacuuguauucuguugcuaUUCACAAUCUCUGCUGAAAAAugauugacuagaucuacgaauaaucuagauuauuaaugcccgu
((((((.......((((((..((((.(((...((((((((.((((((.(((((((((((((.((((((((((..((((((((((((((.(((((((((((.(((.((((....((.((....)).))...)))).))).))))))))))).))))))))).))))).)))))))))).))))))))))))))))))).)))))))).)))..)))))).))))....))))))

Structure
      uucaauu    -  ac    -c   cca        c      u             C          au     -         a           u   a    caga  c  g 
augggu       auag cu  agau  uuc   uagaucua ucgauu auuUUUCAGUAGA GUUGUGAAUA  ugaua aauacaggu uacagaggucu aau uagu    ac ua a
||||||       |||| ||  ||||  |||   |||||||| |||||| ||||||||||||| ||||||||||  ||||| ||||||||| ||||||||||| ||| ||||    || ||  
ugcccg       uauu ga  ucua  aag   aucuagau aguuag uAAAAAGUCGUCU UAACACUUau  guugu uuauguuca auguuuccaga uua auca    ug au a
      ---uaau    a  --    au   --c        c      -             C          -c     c         c           c   g    -aug  u  a 


Annotation confidence Not enough data
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Genome context
chr8: 58966598-58966830 [+]

Database links

Mature sly-miR9472-5p

Accession MIMAT0035449
Description Solanum lycopersicum sly-miR9472-5p mature miRNA
Sequence 52 - UUUCAGUAGACGUUGUGAAUA - 72
Evidence experimental
Illumina [1]

Mature sly-miR9472-3p

Accession MIMAT0035450
Description Solanum lycopersicum sly-miR9472-3p mature miRNA
Sequence 170 - UUCACAAUCUCUGCUGAAAAA - 190
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24376253
    Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
    Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
    J Exp Bot (2014) 65:725-739