miRBase entry: sly-MIR9473

Stem-loop sly-MIR9473


Accession
MI0029114
Description
Solanum lycopersicum sly-MIR9473 precursor miRNA

Literature search
1 open access papers mention sly-MIR9473
(1 sentences)

Sequence

uagcagauauUGGCUGUAAAUCUAAACUCGUucuacuccacuagucaucauauaaugacauuuacuagaagaagagacuauugggguaAAACGAGUUCAGAUUUACAGCcaauauuguu
.(((((.((((((((((((((((.((((((((.(((((((.(((((.((........................))))))).))))))).)))))))).)))))))))))))))))))))

Structure
u     a                A        c       c     a  auauaaugaca 
 agcag uauUGGCUGUAAAUCU AACUCGUu uacucca uaguc uc           u
 ||||| |||||||||||||||| |||||||| ||||||| ||||| ||            
 uuguu auaacCGACAUUUAGA UUGAGCAA auggggu aucag ag           u
-     -                C        A       u     -  aagaagaucau 


Annotation confidence Not enough data
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Genome context
chr7: 3076297-3076415 [+]

Database links

Mature sly-miR9473-5p

Accession MIMAT0035461
Description Solanum lycopersicum sly-miR9473-5p mature miRNA
Sequence 11 - UGGCUGUAAAUCUAAACUCGU - 31
Evidence experimental
Illumina [1]

Mature sly-miR9473-3p

Accession MIMAT0035462
Description Solanum lycopersicum sly-miR9473-3p mature miRNA
Sequence 89 - AAACGAGUUCAGAUUUACAGC - 109
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24376253
    Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
    Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
    J Exp Bot (2014) 65:725-739