Stem-loop bdi-MIR9483a

Accession

MI0029131

Description

Brachypodium distachyon bdi-MIR9483a precursor miRNA

Gene family

MIPF0001996; MIR9483

Literature search

1 open access papers mention bdi-MIR9483a
(2 sentences)

Sequence

aaucucguaggugcuucacaggaaacaguucaauguuugcuggaauggaaaauaucguucaugucuaaaugaggccuacaaagcaagcuaagcuuuggcuacguuuggaagagaauauaucuuuucaauucaaguaaaagUUGAACUGUUUCCUCUGAAGUUCCugcagauuuc
(((((.(((((.((((((.(((((((((((((((.((((((.(((((((((((((.((((...((((((((.((((...(((((.......))))))))).))))))))...)))))))).))))).)))).)))))).))))))))))))))).)))))).))))))))))..

Structure

--     c     u      c               g      g    -     -    c    aug        a    uac     aa 
  aaucu guagg gcuuca aggaaacaguucaau uuugcu gaau ggaaa auau guuc   ucuaaaug ggcc   aaagc  g
  ||||| ||||| |||||| ||||||||||||||| |||||| |||| ||||| |||| ||||   |||||||| ||||   |||||  c
  uuaga cguCC UGAAGU UCCUUUGUCAAGUUg aaauga cuua cuuuu uaua uaag   agguuugc ucgg   uuucg  u
cu     -     U      C               a      a    a     c    -    aga        a    ---     aa 

Annotation confidence Not enough data

Genome context

3: 2804863-2805036 [-]

Mature bdi-miR9483a

• Accession: MIMAT0035489
• Description: Brachypodium distachyon bdi-miR9483a mature miRNA
• Sequence: 141 - UUGAACUGUUUCCUCUGAAGUUCC - 164
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145