Stem-loop sequence bdi-MIR9488

Accession

MI0029137 (change log)

Description

Brachypodium distachyon miR9488 stem-loop

Stem-loop

   --        gc    c                u  g     a  g     cu   --    uaccug    -ua       uugccccgcaaaauauc 
5'   cauugagg  uagg uuuuauguaacuacug uu uggua uu uuuuu  aaa  aucc      uuaa   gcacuga                 a
     ||||||||  |||| |||||||||||||||| || ||||| || |||||  |||  ||||      ||||   |||||||                 c
3'   guaacucc  aucc aaaauguauugaugac aa accau aa aaaag  uuu  uagg      aguu   cgugacu                 u
   uu        uu    -                c  a     c  g     uu   ug    --ccaa    caa       acaguuaagacugcaca 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Bd21; GCA_000005505.1): 1: 50046751-50046943 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0029137

Mature sequence bdi-miR9488

• Accession: MIMAT0035495
• Sequence: 4 - ugagggcuaggcuuuuauguaa - 25
• Evidence: not experimental

References

1. PMID:24367943 "Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon" Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ Genome Biol. 14:R145(2013).