Stem-loop bdi-MIR9490

Accession

MI0029140

Description

Brachypodium distachyon bdi-MIR9490 precursor miRNA

Sequence

216 reads, 5.0 reads per million, 17 experiments

cuuagugcgAGGCCACACCCUAAUGGUCGUGCGggugucuugugaaaagccaaggcccacacggcuaGAAGGGUGUGGCUUGGCGCUAAGCc
((((((((.((((((((((((..((((((((.((((..((((........)))))))).))))))))..)))))))))))).))))))))..

Structure

--        g            AA        C    gu    uga 
  cuuagugc AGGCCACACCCU  UGGUCGUG Gggu  cuug   a
  |||||||| ||||||||||||  |||||||| ||||  ||||    
  GAAUCGCG UUCGGUGUGGGA  aucggcac cccg  gaac   a
cC        G            AG        a    --    cga 

Annotation confidence Not enough data

Genome context

3: 18715092-18715183 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR9490

Mature bdi-miR9490-5p

• Accession: MIMAT0035498
• Description: Brachypodium distachyon bdi-miR9490-5p mature miRNA
• Sequence: 10 - AGGCCACACCCUAAUGGUCGUGCG - 33
• Evidence: not_experimental

Mature bdi-miR9490-3p

• Accession: MIMAT0057033
• Description: Brachypodium distachyon bdi-miR9490-3p mature miRNA
• Sequence: 68 - GAAGGGUGUGGCUUGGCGCUAAGC - 91
• Evidence: experimental ; unknown

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145