Stem-loop bdi-MIR9497

Accession

MI0029148

Description

Brachypodium distachyon bdi-MIR9497 precursor miRNA

Sequence

ucccuccuuUUUCUGAAUACAUGGUGUAUCauguuucuuaagacauggcuuggaccaagaauuacuuuauuuuauaugugauguaauaugauacgaaaccacaauuuucaguaaguaguuuugaagauggaucuggugaugcaaauuucaugucauaaacccacguauugacgaaguaauuuuuggucaaagccuugucuugacuaaaucuuauacacccuguauugagaaaaauagggagu
(((((..(((((((.((((((.(((((((...((((.((((((((.(((((.((((((((((((((((.((..(((((((..((..(((((((.((((.....((((((((.........))))))))(.(((....))).)...)))).))))))).)).))))))).)).)))))))))))))))).))))).))))))))..))))...))))))).)))))).))))))).)))))..

Structure

--     cc       G      U       Cau    -c        u     g                a  uu       au  aa       c    ------------ccaca        uaa 
  ucccu  uuUUUCU AAUACA GGUGUAU   guuu  uuaagaca ggcuu gaccaagaauuacuuu uu  auaugug  gu  uaugaua gaaa                 auuuucag   g
  |||||  ||||||| |||||| |||||||   ||||  |||||||| ||||| |||||||||||||||| ||  |||||||  ||  ||||||| ||||                 ||||||||   u
  aggga  aaaaaga uuaugu ccacaua   uaaa  aguucugu ccgaa cugguuuuuaaugaag ag  uaugcac  ca  auacugu cuuu                 uagaaguu   a
ug     -u       g      c       uuc    uc        u     a                c  -u       -c  -a       a    aaacguaguggucuagg        uug 

Annotation confidence Not enough data

Genome context

2: 49315484-49315725 [-]

Mature bdi-miR9497

• Accession: MIMAT0035506
• Description: Brachypodium distachyon bdi-miR9497 mature miRNA
• Sequence: 10 - UUUCUGAAUACAUGGUGUAUC - 30
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145