miRBase entry: bdi-MIR167f

Stem-loop bdi-MIR167f


Accession
MI0029155
Description
Brachypodium distachyon bdi-MIR167f precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
2 open access papers mention bdi-MIR167f
(7 sentences)

Sequence

gugaaagagUGAAGCUGCCAGCAUGAUCUAgcuuugauccaauguaugucucuacguguggauccuuguuagaucaugccugacagccucauuucuucgcaa
(((((.((((((.((((.((((((((((((((...(((((((((((......))))).))))))...))))))))))).))).)))).)))))).)))))..

Structure
--     a      A    C   -           uuu      -     ug 
  gugaa gagUGA GCUG CAG CAUGAUCUAgc   gaucca augua  u
  ||||| |||||| |||| ||| |||||||||||   |||||| |||||   
  cgcuu uuuacu cgac guc guacuagauug   cuaggu ugcau  c
aa     c      c    a   c           uuc      g     cu 


Annotation confidence Not enough data
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Genome context
4: 1643731-1643832 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bdi-MIR167f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdi-miR167f

Accession MIMAT0035513
Description Brachypodium distachyon bdi-miR167f mature miRNA
Sequence 10 - UGAAGCUGCCAGCAUGAUCUA - 30
Evidence not_experimental

References

  1. PubMed ID: 24367943
    Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
    Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
    Genome Biol (2013) 14:R145