miRBase entry: bdi-MIR167g

Stem-loop bdi-MIR167g


Accession
MI0029156
Description
Brachypodium distachyon bdi-MIR167g precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
2 open access papers mention bdi-MIR167g
(7 sentences)

Sequence

cuugugcgccacaaguagaUGAAGCUGCCAGCAUGAUCUGAacuccacgcaccacauguguaucuuggugcuguguacucgaucuucagauugauuacaugcacgcaugagaaacugugcaggcgaucugcagaucaucuggcagcuucauuuucucauggcagcacaccggcc
..(((((((((..((.(((((((((((((((.((((((((.......(((..((((.((...((.((((((.(((((.((((((....)))))).))))))))).)).))...))))))...))).....))))))))))))))))))))))).))..)))).)))))......

Structure
----cu     -    ca  u               C        Aacucca   -ac    u  gua  u  -    u     c      u 
      ugugc gcca  ag agaUGAAGCUGCCAG AUGAUCUG       cgc   caca gu   uc ug gugc gugua ucgauc u
      ||||| ||||  || ||||||||||||||| ||||||||       |||   |||| ||   || || |||| ||||| ||||||  
      acacg cggu  uc uuuacuucgacgguc uacuagac       gcg   gugu ca   ag ac cacg uacau aguuag c
ccggcc     a    ac  u               -        --gucua   gac    -  aag  u  g    -     u      a 


Annotation confidence Not enough data
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Genome context
1: 71590930-71591103 [-]

Database links

Mature bdi-miR167g

Accession MIMAT0035514
Description Brachypodium distachyon bdi-miR167g mature miRNA
Sequence 20 - UGAAGCUGCCAGCAUGAUCUGA - 41
Evidence not_experimental

References

  1. PubMed ID: 24367943
    Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
    Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
    Genome Biol (2013) 14:R145