miRBase entry: bdi-MIR171e

Stem-loop bdi-MIR171e


Accession
MI0029160
Description
Brachypodium distachyon bdi-MIR171e precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
1 open access papers mention bdi-MIR171e
(2 sentences)

Sequence

gaaggagcgauauuggugagguucaauccgaugcuagauuuuacaucaguguuaagaucuguaucUGAUUGAGCCGUGCCAAUAUCucucuucuu
..(((((.((((((((((.(((((((((.(((((.((((((((((....)).))))))))))))).))))))))).)))))))))).)))))...

Structure
-ga     c          a         c     u        -  u 
   aggag gauauuggug gguucaauc gaugc agauuuua ca c
   ||||| |||||||||| ||||||||| ||||| |||||||| ||  
   uucuc CUAUAACCGU CCGAGUUAG cuaug ucuagaau gu a
uuc     u          G         U     -        u  g 


Annotation confidence Not enough data
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Genome context
1: 30824648-30824742 [-]

Database links

Mature bdi-miR171e

Accession MIMAT0035518
Description Brachypodium distachyon bdi-miR171e mature miRNA
Sequence 66 - UGAUUGAGCCGUGCCAAUAUC - 86
Evidence not_experimental

References

  1. PubMed ID: 24367943
    Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
    Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
    Genome Biol (2013) 14:R145