Stem-loop bdi-MIR171f

Accession

MI0029161

Description

Brachypodium distachyon bdi-MIR171f precursor miRNA

Gene family

MIPF0000104; MIR171_2

Literature search

1 open access papers mention bdi-MIR171f
(2 sentences)

Sequence

acgacauggcaugguauuguuucggcucauguccuucucgagcugauggucggaugagaugUGAGCCGAACCAAUAUCACCCauguauucu
...((((((..((((((((.((((((((((((((.((.(((.(....).))))).).))))))))))))).)))))))).)))))).....

Structure

--acg      ca        u             - u  u   g u 
     acaugg  ugguauug uucggcucauguc c uc cga c g
     ||||||  |||||||| ||||||||||||| | || ||| |  
     uguaCC  ACUAUAAC AAGCCGAGUguag g ag gcu g a
ucuua      -C        C             a u  -   g u 

Annotation confidence Not enough data

Genome context

5: 21672257-21672347 [+]

Mature bdi-miR171f

• Accession: MIMAT0035519
• Description: Brachypodium distachyon bdi-miR171f mature miRNA
• Sequence: 62 - UGAGCCGAACCAAUAUCACCC - 82
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145