miRBase entry: bdi-MIR395q

Stem-loop bdi-MIR395q


Accession
MI0029162
Description
Brachypodium distachyon bdi-MIR395q precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
3 open access papers mention bdi-MIR395q
(31 sentences)

Sequence

aauuaucaugaguuccuugcaagcacuucaugaggcacuaucccaagggcuacuaUGAAGUGUUUGGGGGAACUCuugauauca
...(((((.(((((((((.(((((((((((((.(((.((......)).)))..)))))))))))))))))))))).)))))...

Structure
aau     u         g             -a   a  au 
   uauca gaguuccuu caagcacuucaug  ggc cu  c
   ||||| ||||||||| |||||||||||||  ||| ||   
   auagu CUCAAGGGG GUUUGUGAAGUau  ucg ga  c
acu     u         -             ca   g  ac 


Annotation confidence Not enough data
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Genome context
5: 25456843-25456926 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from bdi-MIR395q
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdi-miR395q

Accession MIMAT0035520
Description Brachypodium distachyon bdi-miR395q mature miRNA
Sequence 56 - UGAAGUGUUUGGGGGAACUC - 75
Evidence not_experimental

References

  1. PubMed ID: 24367943
    Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
    Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
    Genome Biol (2013) 14:R145