Stem-loop bdi-MIR530a

Accession

MI0029168

Description

Brachypodium distachyon bdi-MIR530a precursor miRNA

Gene family

MIPF0000521; MIR530

Sequence

gaagaauggugugauuuuugcUGCAUUUGCACCUGCACCUACaucgaaggaacgauagaagcacugcaccuauuucaucaauuaucgucaugcaggcuucuugauccuccuccuaagcugcuuaggugcaguggcagaugcagguguaucacaggaauuuuc
(((((....((((((.....((((((((((..(((((((((((.(..((((..(((((((((.(((((......................)))))))))))..)))....))))..).))..)))))))))..))))))))))....))))))....)))))

Structure

     augg      uuuug          AC         --  u ga    --ac   --      a     ccuauuucau 
gaaga    ugugau     cUGCAUUUGC  CUGCACCUA  Ca c  agga    gau  agaagc cugca          c
|||||    ||||||     ||||||||||  |||||||||  || |  ||||    |||  |||||| |||||           
cuuuu    acacua     gacguagacg  gacguggau  gu g  uccu    cua  ucuucg gacgu          a
     aagg      -ugug          gu         uc  c aa    ccuc   gu      -     acugcuauua 

Annotation confidence Not enough data

Genome context

5: 16956517-16956678 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR530a

Mature bdi-miR530a

• Accession: MIMAT0035526
• Description: Brachypodium distachyon bdi-miR530a mature miRNA
• Sequence: 22 - UGCAUUUGCACCUGCACCUAC - 42
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145