miRBase entry: bdi-MIR530b

Stem-loop bdi-MIR530b


Accession
MI0029169
Description
Brachypodium distachyon bdi-MIR530b precursor miRNA
Gene family
MIPF0000521; MIR530


Sequence

gugauagugauugagcUGCAUUUGCACCUGCACCUACcaaggaauggucuacauucaccuugcauaugaugcauguaagagcaaggauguccuugacccucucgcucuuccuaggugaguaggugcaguggcagaugcagcucaaucacaagcac
(((...(((((((((((((((((((..((((((((((....(((((.....)))))..(((((((.......)))))))..(((((....)))))......((((.((....))))))))))))))))..)))))))))))))))))))...)))

Structure
   aua                   AC          ------------------caaggaauggucuacauucac       au 
gug   gugauugagcUGCAUUUGC  CUGCACCUAC                                       cuugcau  g
|||   |||||||||||||||||||  ||||||||||                                       |||||||  a
cac   cacuaacucgacguagacg  gacguggaug                                       gaaugua  u
   gaa                   gu          aguggauccuucucgcucucccaguuccuguaggaacga       cg 


Annotation confidence Not enough data
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Genome context
5: 16956889-16957043 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bdi-MIR530b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdi-miR530b

Accession MIMAT0035527
Description Brachypodium distachyon bdi-miR530b mature miRNA
Sequence 17 - UGCAUUUGCACCUGCACCUAC - 37
Evidence not_experimental

References

  1. PubMed ID: 24367943
    Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
    Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
    Genome Biol (2013) 14:R145