Stem-loop bdi-MIR2118a

Accession

MI0029173

Description

Brachypodium distachyon bdi-MIR2118a precursor miRNA

Gene family

MIPF0000745; MIR2118

Literature search

3 open access papers mention bdi-MIR2118a
(31 sentences)

Sequence

gacaaugugaggcaggucgggaagaggaagagaagagggccuuagagcagugggagugggaacauggaggaaagccugacuugcuuuguuuucaccucaaguguuggaggugagaacuugguuuggugcUUUCCGAUGCCUCCCAUUCCUAuuguucucgagcacucguuccucuucccuuuuggcucgcucaguu
(((...(((((.((((..(((((((((((.....(((.((...((((((((((((((((((.(((...(((((((((((...(((..(((((((((((........)))))))))))..))))))).))))))).)))..))))))))))))))))))...)).))).))))))))))).)))).)))))...)))

Structure

   aau     g    uc           gagaa   g  cuu                  -a   gga       -    cuu   uu           aag 
gac   gugag cagg  gggaagaggaa     gag gc   agagcagugggaguggga  cau   ggaaagc cuga   gcu  guuuucaccuc   u
|||   ||||| ||||  |||||||||||     ||| ||   ||||||||||||||||||  |||   ||||||| ||||   |||  |||||||||||    
uug   cgcuc guuu  cccuucuccuu     cuc cg   ucuuguuAUCCUUACCCU  GUA   CCUUUcg gguu   ugg  caagaguggag   g
   acu     g    -u           ----g   a  agc                  CC   --G       u    ---   uu           guu 

Annotation confidence Not enough data

Genome context

5: 13861046-13861241 [-]

Mature bdi-miR2118a

• Accession: MIMAT0035531
• Description: Brachypodium distachyon bdi-miR2118a mature miRNA
• Sequence: 130 - UUUCCGAUGCCUCCCAUUCCUA - 151
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145