Stem-loop bdi-MIR5171b

Accession

MI0029179

Description

Brachypodium distachyon bdi-MIR5171b precursor miRNA

Gene family

MIPF0000382; MIR1122

Literature search

1 open access papers mention bdi-MIR5171b
(1 sentences)

Sequence

uacuugugcacaacauggcguuuuacucccuccgugacauauuaagugacgaaauauuacacauaucuagaagauuuuugguauagauagauacaucuauauuuggacagauuugagucACUUAAUAUGGGACGGAAGAAuuacaaaacaagauguuaaaucuguacaauccuauccguuuuuagauaaucaug
...(((((((.(((((...(((((......(((((..(((((((((((((.((((....((...((((...))))...))((((((((......))))))))........))))..)))))))))))))..)))))........)))))...))))).....)))))))...((((........))))......

Structure

----------------------uac       ----c     ggc     --acuccc     ga             -g    auuacacauaucuagaagauuuuug        ag 
                         uugugca     aacau   guuuu        uccgu  cauauuaagugac  aaau                         guauagau  a
                         |||||||     |||||   |||||        |||||  |||||||||||||  ||||                         ||||||||   
                         aacaugu     uugua   caaaa        AGGCA  GUAUAAUUCAcug  uuua                         uauaucua  u
guacuaauagauuuuugccuauccu       cuaaa     gaa     cauuAAGA     GG             ag    -----------------gacagguu        ca 

Annotation confidence Not enough data

Genome context

2: 11086341-11086534 [-]

Mature bdi-miR5171b

• Accession: MIMAT0035537
• Description: Brachypodium distachyon bdi-miR5171b mature miRNA
• Sequence: 120 - ACUUAAUAUGGGACGGAAGAA - 140
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145