Stem-loop bdi-MIR5174f

Accession

MI0029180

Description

Brachypodium distachyon bdi-MIR5174f precursor miRNA

Gene family

MIPF0001200; MIR5067

Literature search

1 open access papers mention bdi-MIR5174f
(4 sentences)

Sequence

uucCCUCCGUUUCAUAAAGGUUGGcacgguugugaacuaccucuaauucaaagccgugccaaccuuuacgaaacggagggagua
(((((((((((((.(((((((((((((((((.((((.((....)).)))).))))))))))))))))).)))))))))))))..

Structure

--             A                 g    c  c 
  uucCCUCCGUUUC UAAAGGUUGGcacgguu ugaa ua c
  ||||||||||||| ||||||||||||||||| |||| ||  
  gagggaggcaaag auuuccaaccgugccga acuu au u
au             c                 a    a  c 

Annotation confidence Not enough data

Genome context

3: 18576851-18576934 [-]

Mature bdi-miR5174f

• Accession: MIMAT0035538
• Description: Brachypodium distachyon bdi-miR5174f mature miRNA
• Sequence: 4 - CCUCCGUUUCAUAAAGGUUGG - 24
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145