Stem-loop sequence bdi-MIR5281b

Accession

MI0029181 (change log)

Description

Brachypodium distachyon miR5281b stem-loop

Stem-loop

   --      cu -     uagu             c   c    --uca    cc   cucua        ga c   aua   g   -    ac    aucuacaacuuuauaccaagcuuuauuaaau 
5'   acuacu  c uuccu    uuuauaagauguu ugg uuug     uaua  aag     caaaccuu  c aag   aua uaa aucg  cgac                               c
     ||||||  | |||||    ||||||||||||| ||| ||||     ||||  |||     ||||||||  | |||   ||| ||| ||||  ||||                               u
3'   ugaugg  g aagga    aaauauucuacaa auc aaac     auau  uuc     guuuggag  g uuc   uau auu uagu  guug                               a
   ga      ag c     ---u             u   a    ucaaa    aa   ----a        -a u   aaa   g   a    -c    aagaguuuauuuauauucuauagauaacguu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 3: 48737185-48737430 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0029181

Mature sequence bdi-miR5281b

• Accession: MIMAT0035539
• Sequence: 220 - ucuuauaaauaggaacggagg - 240
• Evidence: not experimental

References

1. PMID:24367943 "Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon" Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ Genome Biol. 14:R145(2013).