miRBase entry: bdi-MIR5200a

Stem-loop bdi-MIR5200a


Accession
MI0029233
Description
Brachypodium distachyon bdi-MIR5200a precursor miRNA
Gene family
MIPF0001904; MIR5200

Literature search
3 open access papers mention bdi-MIR5200a
(19 sentences)

Sequence

aaagcacuagaGCCUUAGGGAAUAUCUACACUaguaaguucuuuuccuuucuucuggacaugcuuagcagUGUAGAUACUCCCUAAGGCUUcggucguauu
...(((((.((((((((((((.((((((((((..(((((.....(((........)))...)))))..)))))))))).)))))))))))).))).))...

Structure
aaa  -   a            A          ag     ucuuu   uuu 
   gc acu gaGCCUUAGGGA UAUCUACACU  uaagu     ucc   c
   || ||| |||||||||||| ||||||||||  |||||     |||    
   ug ugg UUCGGAAUCCCU AUAGAUGUga  auucg     agg   u
uua  c   c            C          cg     --uac   ucu 


Annotation confidence Not enough data
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Genome context
1: 47454224-47454324 [+]

Database links

Mature bdi-miR5200a-5p

Accession MIMAT0035544
Description Brachypodium distachyon bdi-miR5200a-5p mature miRNA
Sequence 12 - GCCUUAGGGAAUAUCUACACU - 32
Evidence not_experimental

Mature bdi-miR5200a-3p

Accession MIMAT0035545
Description Brachypodium distachyon bdi-miR5200a-3p mature miRNA
Sequence 71 - UGUAGAUACUCCCUAAGGCUU - 91
Evidence not_experimental

References

  1. PubMed ID: 24285787
    Regulation of FLOWERING LOCUS T by a microRNA in Brachypodium distachyon
    "Wu L, Liu D, Wu J, Zhang R, Qin Z, Liu D, Li A, Fu D, Zhai W, Mao L"
    "Plant Cell (2013) 25:4363-4377