Stem-loop bdi-MIR5200b

Accession

MI0029234

Description

Brachypodium distachyon bdi-MIR5200b precursor miRNA

Gene family

MIPF0001904; MIR5200

Literature search

3 open access papers mention bdi-MIR5200b
(19 sentences)

Sequence

cacuaguaaaGCCUUAGAGAGUAUCUACACUgguaguauucuucuuucuugguggaaaaguacuugccacUGUAGAUACUCCCUAAGGCUUuaacaggagg
..((..(((((((((((.(((((((((((.((((((((((.((((........)))).))))).))))).))))))))))).)))))))))))..))....

Structure

--ca  ag           A           C     -     c    uuc 
    cu  uaaaGCCUUAG GAGUAUCUACA Uggua guauu uucu   u
    ||  ||||||||||| ||||||||||| ||||| ||||| ||||    
    ga  auUUCGGAAUC CUCAUAGAUGU accgu cauga aagg   u
ggag  ca           C           c     u     a    ugg 

Annotation confidence Not enough data

Genome context

1: 47483427-47483527 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR5200b

Mature bdi-miR5200b-5p

• Accession: MIMAT0035546
• Description: Brachypodium distachyon bdi-miR5200b-5p mature miRNA
• Sequence: 11 - GCCUUAGAGAGUAUCUACACU - 31
• Evidence: not_experimental

Mature bdi-miR5200b-3p

• Accession: MIMAT0035547
• Description: Brachypodium distachyon bdi-miR5200b-3p mature miRNA
• Sequence: 71 - UGUAGAUACUCCCUAAGGCUU - 91
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145