Stem-loop dvi-mir-1000

Accession

MI0029235

Description

Drosophila virilis dvi-mir-1000 precursor miRNA

Gene family

MIPF0000701; mir-1000

Sequence

ucgucgaucguugcgcuugccagugAUAUUGUCCUGUCACAGCAGUAuuguacguuaagcaauugguaCUGCUGAGCCGGGGCAUUAACAuuguugagcgucguuagcaaccaaaaagcc
..((.((.((..(((((((.(((((.((.(((((((.(.(((((((((((...((...))...))))))))))).).))))))).)).))))).))))))))))).))............

Structure

----------uc  c  u  uu       c     A  U       U A           uac  u 
            gu ga cg  gcgcuug cagug UA UGUCCUG C CAGCAGUAuug   gu  
            || || ||  ||||||| ||||| || ||||||| | |||||||||||   || a
            cg uu gc  ugcgagu guuAC AU ACGGGGC G GUCGUCauggu   cg  
ccgaaaaaccaa  a  -  --       u     A  U       C A           uaa  a 

Annotation confidence Not enough data

Genome context

scaffold_12855: 6810253-6810372 [-]

Mature dvi-miR-1000-5p

• Accession: MIMAT0035548
• Description: Drosophila virilis dvi-miR-1000-5p mature miRNA
• Sequence: 26 - AUAUUGUCCUGUCACAGCAGUA - 47
• Evidence: experimental ; Illumina [1]

Mature dvi-miR-1000-3p

• Accession: MIMAT0035549
• Description: Drosophila virilis dvi-miR-1000-3p mature miRNA
• Sequence: 69 - CUGCUGAGCCGGGGCAUUAACA - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372