miRBase entry: dvi-mir-311

Stem-loop dvi-mir-311


Accession
MI0029246
Description
Drosophila virilis dvi-mir-311 precursor miRNA
Gene family
MIPF0000566; mir-310


Sequence

cguccgcaugaccauuuuaAGGACGGUAUUUGUGACAAUAUGugcaguuaaaucaauuuguuuagcaUAUUGCACAUCUCCCGGCCUAaaaaugaaccgugcucucu
.....(((((..((((((.(((.(((....((((.((((((((((((..........))))...))))))))))))....))).))).))))))...))))).....

Structure
cgucc     -ac      a   A   UAUU    A        ---    uuaa 
     gcaug   cauuuu AGG CGG    UGUG CAAUAUGu   gcag    a
     |||||   |||||| ||| |||    |||| ||||||||   ||||     
     cgugc   guaaaa UCC GCC    ACAC GUUAUacg   uguu    u
ucucu     caa      A   G   CUCU    -        auu    uaac 


Annotation confidence Not enough data
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Genome context
scaffold_12875: 13668884-13668990 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from dvi-mir-311
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-311-5p

Accession MIMAT0035566
Description Drosophila virilis dvi-miR-311-5p mature miRNA
Sequence 20 - AGGACGGUAUUUGUGACAAUAUG - 42
Evidence experimental
Illumina [1]

Mature dvi-miR-311-3p

Accession MIMAT0035567
Description Drosophila virilis dvi-miR-311-3p mature miRNA
Sequence 68 - UAUUGCACAUCUCCCGGCCUA - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372