miRBase entry: dvi-mir-969

Stem-loop dvi-mir-969


Accession
MI0029260
Description
Drosophila virilis dvi-mir-969 precursor miRNA
Gene family
MIPF0000879; mir-969


Sequence

agcagcucgcgcuucugcccuacgcacgAGUUCCACUAAUCAAGUUUUGagcggauucgaaagucgaaAACUUGACACGUUGAGCUCGUccguggggcggcauucaagccagaagagcaca
........((.(((((((((((((.((((((((.((...(((((((((..((..........))..)))))))))...)).)))))))).))))))))(((......)))))))).))...

Structure
agcagcuc  g     ------------        c        C  UAA         Ga  ggau 
        gc cuucu            gcccuacg acgAGUUC AC   UCAAGUUUU  gc    u
        || |||||            |||||||| |||||||| ||   |||||||||  ||     
        cg gaaga            cggggugc UGCUCGAG UG   AGUUCAAaa  ug    c
-----aca  a     ccgaacuuacgg        c        U  CAC         gc  aaag 


Annotation confidence Not enough data
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Genome context
scaffold_12928: 1264079-1264199 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dvi-mir-969
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-969-5p

Accession MIMAT0035588
Description Drosophila virilis dvi-miR-969-5p mature miRNA
Sequence 29 - AGUUCCACUAAUCAAGUUUUG - 49
Evidence experimental
Illumina [1]

Mature dvi-miR-969-3p

Accession MIMAT0035589
Description Drosophila virilis dvi-miR-969-3p mature miRNA
Sequence 69 - AACUUGACACGUUGAGCUCGU - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372