miRBase entry: dvi-mir-996

Stem-loop dvi-mir-996


Accession
MI0029273
Description
Drosophila virilis dvi-mir-996 precursor miRNA
Gene family
MIPF0000449; mir-996


Sequence

cucugacucuauuuugucGGCGAACAUGGAUCUAGUGCACGguuguucaugauuaaguucgUGACUAGAUUUCAUGCUCGUcuauuaaguugggucaa
...((((((.((((.((.(((((.((((((((((((.(((((................))))))))))).)))))).))))).)).)))).)))))).

Structure
cuc      u    u  c     A      -      G     uuguuca 
   ugacuc auuu gu GGCGA CAUGGA UCUAGU CACGg       u
   |||||| |||| || ||||| |||||| |||||| |||||        
   acuggg ugaa ua cUGCU GUACUU AGAUCA GUgcu       g
--a      u    u  u     C      U      -     ugaauua 


Annotation confidence Not enough data
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Genome context
scaffold_12822: 2333414-2333511 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dvi-mir-996
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-996-5p

Accession MIMAT0035610
Description Drosophila virilis dvi-miR-996-5p mature miRNA
Sequence 19 - GGCGAACAUGGAUCUAGUGCACG - 41
Evidence experimental
Illumina [1]

Mature dvi-miR-996-3p

Accession MIMAT0035611
Description Drosophila virilis dvi-miR-996-3p mature miRNA
Sequence 62 - UGACUAGAUUUCAUGCUCGU - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372