miRBase entry: dvi-mir-9543a

Stem-loop dvi-mir-9543a


Accession
MI0029281
Description
Drosophila virilis dvi-mir-9543a precursor miRNA


Sequence

uuuuggucuaccuuugacccaaugccacgugcaaccUGAGGUGAACAUGUAAUAUAUaacuguuuacgauauguuAAAUAUUGCUUGUUUACUCAGGcugcaagcggaccaguuaucgagguugacaucaa
.....(((.(((((((((......((.(.((((.((((((.((((((.(((((((.((((((((...)))).)))).))))))).)))))))))))).)))).).))....))))..))))).))).....

Structure
uuuug   u     --    ccaaug  a g    a      G      U       A    -    u 
     guc accuu  ugac      cc c ugca ccUGAG UGAACA GUAAUAU Uaac uguu  
     ||| |||||  ||||      || | |||| |||||| |||||| ||||||| |||| |||| a
     cag uggag  auug      gg g acgu GGACUC AUUUGU CGUUAUA Auug auag  
aacua   u     cu    --acca  c a    c      -      U       A    u    c 


Annotation confidence Not enough data
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Genome context
scaffold_12970: 9427846-9427976 [-]
Clustered miRNAs
17 other miRNAs are < 10 kb from dvi-mir-9543a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-9543a-5p

Accession MIMAT0035626
Description Drosophila virilis dvi-miR-9543a-5p mature miRNA
Sequence 37 - UGAGGUGAACAUGUAAUAUAU - 57
Evidence experimental
Illumina [1-2]

Mature dvi-miR-9543a-3p

Accession MIMAT0035627
Description Drosophila virilis dvi-miR-9543a-3p mature miRNA
Sequence 76 - AAAUAUUGCUUGUUUACUCAGG - 97
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372

  2. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250