Stem-loop dvi-mir-9544a

Accession

MI0029282

Description

Drosophila virilis dvi-mir-9544a precursor miRNA

Sequence

aacaaaguuuauuugaauuugagucauaugaaaUUUGCACAGUGGUCUUUUAUAACgaguuuuuguuacacucguUAAAAGAGCCGCCGCGCAaaucucauguggcuuaugcccaacguuugcuuaugu
.(((((((..(((((....((((((((((((.((((((.(.((((.(((((.((((((((.........)))))))).))))))))).).)))))).))))))))))))....))).))..)))).)))

Structure

a   -    uu  -   aauu            a      A A    U     A        uuu 
 aca aagu  au uug    ugagucauauga aUUUGC C GUGG CUUUU UAACgagu   u
 ||| ||||  || |||    |||||||||||| |||||| | |||| ||||| ||||||||   g
 ugu uucg  ug aac    auucgguguacu uaaACG G CGCC GAGAA AUugcuca   u
-   a    uu  c   ccgu            c      C C    -     A        cau 

Annotation confidence Not enough data

Genome context

scaffold_12970: 9428974-9429102 [-]

Clustered miRNAs

16 other miRNAs are < 10 kb from dvi-mir-9544a

Mature dvi-miR-9544a-5p

• Accession: MIMAT0035628
• Description: Drosophila virilis dvi-miR-9544a-5p mature miRNA
• Sequence: 34 - UUUGCACAGUGGUCUUUUAUAAC - 56
• Evidence: experimental ; Illumina [1-2]

Mature dvi-miR-9544a-3p

• Accession: MIMAT0035629
• Description: Drosophila virilis dvi-miR-9544a-3p mature miRNA
• Sequence: 76 - UAAAAGAGCCGCCGCGCA - 93
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250