Stem-loop bra-MIR9563a

Accession

MI0029312

Description

Brassica rapa bra-MIR9563a precursor miRNA

Gene family

MIPF0001941; MIR9563

Sequence

gaaguuagcaagauuaaugggaaguucuuagcggaauauaagaACCCGUCUCUUAAUUUUUAACuaaaaaaauuaagaaccggauucuuaacuuuuuuuuaguUAAAAGUUAAGAGACAAGUUAuuauauuucuuaagugccuccucuuaagagcacuugcaacggg
...(((.(((((.((((.((((.((.(((((.(((((((((.(((..((((((((((((((((((((((((((((((((.....)))))))..)))))))))))))))))))))))))..))).)))))))))))))).)).)))).)))).....))))))))...

Structure

gaa   a     ----a    u    a  u     c         g   CC                         --       c 
   guu gcaag     uuaa ggga gu cuuag ggaauauaa aAC  GUCUCUUAAUUUUUAACuaaaaaaa  uuaagaa c
   ||| |||||     |||| |||| || ||||| ||||||||| |||  |||||||||||||||||||||||||  ||||||| g
   caa cguuc     aauu uccu cg gaauu cuuuauauu UUG  CAGAGAAUUGAAAAUugauuuuuuu  aauucuu g
ggg   -     acgag    c    c  u     -         A   AA                         uc       a 

Annotation confidence Not enough data

Genome context

chrA1: 26607663-26607829 [-]

Mature bra-miR9563a-5p

• Accession: MIMAT0035685
• Description: Brassica rapa bra-miR9563a-5p mature miRNA
• Sequence: 44 - ACCCGUCUCUUAAUUUUUAAC - 64
• Evidence: experimental ; Illumina [1]

Mature bra-miR9563a-3p

• Accession: MIMAT0035686
• Description: Brassica rapa bra-miR9563a-3p mature miRNA
• Sequence: 104 - UAAAAGUUAAGAGACAAGUUA - 124
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146