Stem-loop sequence gga-mir-92-2

Accession

MI0029335 (change log)

Description

Gallus gallus miR-92-2 stem-loop

Literature search

17 open access papers mention gga-mir-92-2
(40 sentences)

Stem-loop

   -g        ug   g     uu  u   u     gua  u 
5'   uuccuccg  ggu gggau  gu gca uacuu   gc g
     ||||||||  ||| |||||  || ||| |||||   || u
3'   aaggaggu  ccg cccug  ca cgu augag   ug g
   ga        gu   g     uu  -   u     --a  u 

Deep sequencing

109630 reads, 1.44e+03 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr4: 3994560-3994640 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-92-2

• gga-mir-106: chr4: 3995151-3995231 [-]
• gga-mir-18b: chr4: 3995020-3995103 [-]
• gga-mir-20b: chr4: 3994839-3994923 [-]
• gga-mir-19b-2: chr4: 3994707-3994789 [-]
• gga-mir-92-2: chr4: 3994560-3994640 [-]
• gga-mir-363: chr4: 3994409-3994515 [-]

Database links

• miRBase Tracker:MI0029335

Mature sequence gga-miR-92-3p

• Accession: MIMAT0001109
• Sequence: 51 - uauugcacuugucccggccug - 71
• Deep sequencing: 220017 reads, 5 experiments
• Evidence: experimental; cloned [2], Illumina [3]

References

1. PMID:24798503 "Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles" Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ Evol Dev. 16:189-196(2014).