Stem-loop sequence gga-mir-203b

Accession

MI0029341 (change log)

Description

Gallus gallus miR-203b stem-loop

Literature search

16 open access papers mention gga-mir-203b
(151 sentences)

Stem-loop

   --cg      gc    ca      c  a    u    caauuaug    a 
5'     ggccuc  uggu  aguggu cu aaca uuca        auag g
       ||||||  ||||  |||||| || |||| ||||        ||||  
3'     ucggag  acca  ucacca ga uugu aagu        uguc a
   ggag      ga    cg      a  a    c    --------    a 

Deep sequencing

11 reads, 0 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr5: 50769282-50769373 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-203b

• gga-mir-203a: chr5: 50769283-50769380 [+]
• gga-mir-203b: chr5: 50769282-50769373 [-]

Database links

• miRBase Tracker:MI0029341

Mature sequence gga-miR-203b-3p

• Accession: MIMAT0037548
• Sequence: 55 - uugaacuguuaagaaccacugc - 76
• Deep sequencing: 10 reads, 3 experiments
• Evidence: not experimental

References

1. PMID:24798503 "Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles" Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ Evol Dev. 16:189-196(2014).